CCing Tutor list.
here are the entire code
>
>
>import sys
>in_file = open(sys.argv[1], 'r').readlines()
>locus = ''
>accession = ''
>organism = ''
>
>OK, as suspected you initialise these to empty strings so they almost
>certainly
are being printed they just don't contain anything. Its easilyy proved by
making
the initial value something visible like a dash '-'... say
for element in in_file:
>
> if element.find(LOCUS'):
> locus += element
>
>
>The only time this is not executed is if LOCUS is at the
>
>very start of the line. In *every* other case this will
>be executed. Even if LOCUS is not in the element.
>
>
>
>why is that?Because the Python 'if' test treats any number other than zero as
>True.
And the string find() method returns the index at which the string is
found or -1. So the only time you get zero(False) is if the string starts
on the first character. If the string is missing you get a -1 which is
considered True
When you added the >=0 you eliminated the cases where find()
returned -1, ie where the string was not found and so you checked
the other search cases.
--
Alan G
Author of the Learn to Program web site
http://www.alan-g.me.uk/
http://www.flickr.com/photos/alangauldphotos
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