dear all, thanks so much!! I explain better my problem :http://pastebin.com/iiPZMi2U
this is my workflow. Take my data from readset an create a command list ena = Rnaseq() The order of the self.step are the order I wan to to execute my analisys. So this is the order: In [160]: ena.show() 1- trimmomatic 2- merge_trimmomatic_stats 3- star 4- picard_sort_sam 5- rnaseqc 6- wiggle 7- cufflinks 8- cuffquant 9- gq_seq_utils_exploratory_analysis_rnaseq First aim is to write a code to write all the pipeline . up to now I use this: job1 = ena.trimming() ena.prepare_run(job1) ena.prepare_run(job2) .. the other aim is to selcet a range number to execute i.e. 2-9 or 1-4... _______________________________________________ Tutor maillist - Tutor@python.org To unsubscribe or change subscription options: https://mail.python.org/mailman/listinfo/tutor
