> A google search turned up this thread:

The guy in that thread not only inhibits checking the volume on boot,
but also sets it no not mount automatically at boot. Mhh, I thought
'noauto' was the default setting for vfat partitions after installation.
It should be worth trying to comment out the whole hda1 line in
/etc/fstab. Could you please also provide a copy of your fstab, or at
least the relevant lines? Of course, this is merely a workaround, not a
solution.

As a side note: The boot sector should match its backup in the first
place. This seems to be a Windows problem, however, since I've also seen
this quite often back in the days without a Linux installation. That
being said, it would still be a Good Thing if fsck/mount failed more
gracefully, or at least provided the user with enough information to
solve the problem (it seems a lot of people get confused by this
problem).

Anyway: This is a bug in dosfsutils, not in e2fsprogs. You may therefore
get more help by filing a new bug report against dosfstools. Feel free
to quote any information I gave you that you mayf find noteworthy.

-- 
filesystem check fails on boot, but filesystem isn't bad
https://launchpad.net/bugs/48563

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