After the mail is sent (and the Evolution compose window disappears)
xwininfo -root -all still shows that Evolution continues to have an open
window:

$ xwininfo -root -all | grep -i evo
     0x180003b "evolution": ()  10x10+-100+-100  +-100+-100
     0x1800001 "evolution": ("evolution" "Evolution")  10x10+10+10  +10+10

So evolution has started a 10x10 window which is off-screen at -100 x
-100.  This is why it keeps running.

$ xkill -id 0x180003b
xkill:  killing creator of resource 0x180003b

This causes evolution to finally exit.

-- 
Evolution stays running in the background when mailto: link used 
https://bugs.launchpad.net/bugs/46860
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