I am not sure it is the same problem but the gnome-panel freezes on me
too after a while... not sure how and why?

Here is what I do so I am able to work. I can work if I only opened all
my windows before the freeze occurs after this I cannot even open any
app via the terminal. I still can use all apps that are open.

1) restart computer (kill gdm or doing a crtl-alt-backspace both have a 
negative outcome)
2) quickly open all apps I need 

I have hardy with backports on a dell d620 with a digital screen above my 
laptop using xrandr.
gnome-panel version is 1:2.22.2-0ubuntu-1

I did try a lot of things to overcome this problem, it did at least cost
me a lot of wasted working hours unfortunatly...

Removing all .gconf* and .gnome* folders (a few times) 
Reinstalling gnome-panel and nautilus
Disable compiz
Moved the gnome-panel on both screens but on both screens this problem occures
using only the laptop screen

... but none solved it.

Cheers

-- 
Hardy: opening a drawer can randomly make gnome-panel hang using 100% cpu
https://bugs.launchpad.net/bugs/235944
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