This problem is because new thinkpad-acpi in kernel 2.6.27.
New thinkpad-acpi: add bluetooth and WWAN rfkill support, and it enable 
bluetooth defaultly when it init. So you can see your bluetooth always enabled 
when your system boot up.

To resolve it, you should change your modprobe.conf if thinkpad-acpi built as a 
module.
  $ echo "options thinkpad_acpi bluetooth=disable" > 
/etc/modprobe.d/thinkpad-acpi
  $ update-modules

Or change your kernel command line if thinkpad-acpi built in kernel --
add "bluetooth=disable" to your kernel command line.

Done


After your system boot up. You can "echo enable/disable > 
/proc/acpi/ibm/bluetooth" to enable or disable bluetooth.

-- 
bluetooth always enabled since 2.6.27
https://bugs.launchpad.net/bugs/273535
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