Yup, I can pretty much just echo what the others are saying. This seems
to happen ONLY with Xinerama enabled -- when I don't enable Xinerama it
doesn't occur. First I thought this had something to do with mouse
grabbing since it only happened (for me) in VirtualBox and KVM, but now
it seems that the trigger (at least for my system) is simply high CPU
load.

I've tested with KDE4.1.2 and xmonad, both display exactly the same
symptoms -- everything runs normally, but X does not receive mouse
events (as reported by xev). In the logs, there is no indication that
the mouse has disconnected or anything else -- it just quietly stops
working.

-- 
No more mouse events after using rdesktop
https://bugs.launchpad.net/bugs/55739
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