Problem persists in intrepid. Seems to be the best of all possible options is:
1) Whenever you hibernate, save a copy of the grub menu.lst to a backup location
2) Change menu.lst to boot the currently running kernel by default, with a 
label simply reading "Resume from Hibernation".
3) If possible, add a warning message to the grub menu that booting any other 
option will result in a loss of the hibernated state
4) On resume from hibernation, restore the backup menu.lst from step 1.

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Kernel upgrades without reboot break resume from hibernation
https://bugs.launchpad.net/bugs/76424
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