This bug seems to be fixed in Intrepid and can be closed.
I just installed Eclipse and Tomcat5.5 via apt-get and the Web Tools
Platform 1.5 (needed for "Dynamic Web Project") via the Eclipse update
mechanism (WTP is not packaged for Ubuntu yet).
Selecting /usr/share/tomcat5.5 as the "tomcat installation directory"
works just fine.
** Changed in: eclipse (Ubuntu)
Status: Confirmed => Fix Released
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Eclipse can not see tomcat installation
https://bugs.launchpad.net/bugs/123865
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