Same here.. and it appears some of the postinst/postrm for zabbix-agent
packages relies on /var/run/zabbix-server as well.

Issues:

  debian/zabbix-agent.init:DIR=/var/run/zabbix-server
  debian/zabbix-agent.postinst:        --home /var/run/zabbix-server/ 
--no-create-home \

-- 
zabbix-agent init script error
https://bugs.launchpad.net/bugs/247207
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