I have this problem as well ( 4 disks + hot spare with one raid10 /lvm)
and one raid1 (/) array ).

Workaround:

Setting BOOT_DEGRADED=true in /etc/initramfs-tools/conf.d/mdadm works
like a charm.

You need to do an
#sudo update-initramfs -u
afterwards.

Drawback: booting takes longer than normal, since mdadm waits 30s to
assemble the (presumably) broken array and I'm not sure what happens if
the arrays are *really* broken

-- 
Raid10 array not assembled at boot, all disks are marked as spare
https://bugs.launchpad.net/bugs/316670
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