It seems that the problem is related to unresponsive samba shares:

If a mounted samba share becomes unreachable (because the remote machine
was shut down, or the network connection failed) the problem begins.

After umointing the unresponsive share (sudo umount --force /path) KDE
responds immediately to mouse clicks.

-- 
Very slow response to mouse clicks by the KDE desktop.
https://bugs.launchpad.net/bugs/346021
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