For gdm, at the top of /etc/X11/gdm/Xsession, there is
PROGNAME=Xsession, so another solution is to add this condition before
including ~/.bashrc in ~/.bash_profile :

# include .bashrc if it exists
if [ "$PROGNAME" != "Xsession" -a -f ~/.bashrc ]; then
    . ~/.bashrc
fi

and create a link ~/.profile to ~/.bash_profile.

-- 
.bash_profile is not sources when X session starts
https://launchpad.net/bugs/66004

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