(Disclosure: I am the author of apsw).

Jaunty includes APSW 3.5.9-r2 where that line is commented out as I
distribute it that way, so a simple upgrade to Jaunty will solve your
immediate problem.

You can also build APSW yourself.  It is really easy and can even
download the latest SQLite for you!  See
http://apsw.googlecode.com/svn/publish/build.html - in summary 'python
setup.py --fetch-sqlite build' will make the extension which you can
then copy to whatever directory is most useful for you.

I have also been meaning to get around to setting up a PPA that contains
the lastest APSW with the latest SQLite ...

-- 
SQLite extension loading is not supported and should be
https://bugs.launchpad.net/bugs/322884
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