A few things: 
 - can you target 'karmic' in debian/changelog instead of 'jaunty'?
 - can you add (LP: #387043) to the changelog entry?
 - do you think it'd make sense to fix python/aclocal.m4 in one patch (that you 
could send upstream) and configure in a second patch? that would have the 
advantage that in a new release, when some bits change in configure (almost 
inevitable), you don't need to fix configure manually :-)

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[jaunty] Python bindings placed in wrong directory
https://bugs.launchpad.net/bugs/387043
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