This problem continues. I can do anything I need to with Synaptic or
update-manager as long as I launch them from a terminal using sudo but
if I try to launch them from the menu the hang (I presume because they
don't have authority to write the files they need to). gksu does not
seem to be a problem.

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Synaptic Not Prompting For Password/Hangs
https://bugs.launchpad.net/bugs/402781
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