I'm assuming you're using Ubuntu Karmic, which brings a new unstable release of 
GTK+ and its new incompatible changes in the XInput event processing. Try 
applying to the source code the two patches at
http://sourceforge.net/tracker/?func=detail&aid=2829716&group_id=163434&atid=827735
(should fix the difficulties of drawing with devices other than tablet pens)
and
http://sourceforge.net/tracker/?func=detail&aid=2816361&group_id=163434&atid=827735
(for the latter one: the revised version that says "also fixes menu issues in 
GTK+ 2.17")

Hope this helps,
Denis

** Bug watch added: SourceForge.net Tracker #2829716
   http://sourceforge.net/support/tracker.php?aid=2829716

** Bug watch added: SourceForge.net Tracker #2816361
   http://sourceforge.net/support/tracker.php?aid=2816361

-- 
xournal input defaults to diagonal line, cannot change option
https://bugs.launchpad.net/bugs/404019
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