I found a fix that suggested that you add the option 'pci=routeirq' to
the end of your kernel line in /boot/grub/menu.lst .

http://ubuntuforums.org/showpost.php?p=7847684&postcount=236

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[Jaunty] Slow transfer rate writing to automounted usb drives
https://bugs.launchpad.net/bugs/337830
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