I have this problem as well.  I tried adding the pci-routeirq and it
made no difference that I can see.  Nautilus can take up to a minute to
open my home folder, as well as directories on an NTFS partition or a
vfat partition on an external hard drive.

It's intermittent for me, though.  Any suggestions as to how to figure
out what makes it lag sometimes, and not others?

-- 
[Jaunty] Slow transfer rate writing to automounted usb drives
https://bugs.launchpad.net/bugs/337830
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