I'm wondering if the link was valid at the time of the upgrade...
However since it also contains a mention about an altered 'TopDir'
(although through creating a link) I'd think a reference to bug 246659
is in place here.

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upgrade to 9.04 - backuppc fail (/var/lib/backuppc is link to other file system)
https://bugs.launchpad.net/bugs/413393
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