I just did it without any problems. Have you tried it recently?

----
<<< nixter...@kabowabo :: ~ :: 22:23.27 Wed Sep 23 2009                 
>>> [271] sudo apt-get build-dep kwave      
Reading package lists... Done               
Building dependency tree                    
Reading state information... Done           
The following NEW packages will be installed:
  libasound2-dev libaudiofile-dev libfftw3-dev libflac++-dev libflac-dev 
libgsl0-dev libid3-3.8.3-dev libid3-3.8.3c2a libmad0-dev libogg-dev librecode0 
libvorbis-dev poxml recode
0 upgraded, 14 newly installed, 0 to remove and 35 not upgraded.                
                                                                                
                  
Need to get 5503kB/6044kB of archives.                                          
                                                                                
                  
After this operation, 22.7MB of additional disk space will be used.             
                                                                                
                  
Do you want to continue [Y/n]?                                                  
                                                                                
                  
Get:1 http://archive.ubuntu.com karmic/main libaudiofile-dev 0.2.6-7ubuntu2 
[128kB]                                                                         
                      
Get:2 http://archive.ubuntu.com karmic/main libfftw3-dev 3.2.1-2ubuntu2 
[2002kB]                                                                        
                          
Get:3 http://archive.ubuntu.com karmic/main libogg-dev 1.1.4~dfsg-1 [62.2kB]    
                                                                                
                  
Get:4 http://archive.ubuntu.com karmic/main libflac-dev 1.2.1-2build1 [220kB]   
                                                                                
                  
Get:5 http://archive.ubuntu.com karmic/main libflac++-dev 1.2.1-2build1 
[48.7kB]                                                                        
                          
Get:6 http://archive.ubuntu.com karmic/main libgsl0-dev 1.12+dfsg-1 [1099kB]    
                                                                                
                  
Get:7 http://archive.ubuntu.com karmic/main libid3-3.8.3c2a 3.8.3-7.2ubuntu1 
[168kB]                                                                         
                     
Get:8 http://archive.ubuntu.com karmic/main libid3-3.8.3-dev 3.8.3-7.2ubuntu1 
[252kB]                                                                         
                    
Get:9 http://archive.ubuntu.com karmic/main libmad0-dev 0.15.1b-4 [75.8kB]
Get:10 http://archive.ubuntu.com karmic/main librecode0 3.6-15 [702kB]
Get:11 http://archive.ubuntu.com karmic/main libvorbis-dev 1.2.0.dfsg-6 [463kB]
Get:12 http://archive.ubuntu.com karmic/main poxml 4:4.3.1-0ubuntu1 [160kB]
Get:13 http://archive.ubuntu.com karmic/main recode 3.6-15 [122kB]
Fetched 5503kB in 5s (1096kB/s)
Selecting previously deselected package libasound2-dev.
(Reading database ... 111582 files and directories currently installed.)
Unpacking libasound2-dev (from .../libasound2-dev_1.0.20-3ubuntu5_i386.deb) ...
Selecting previously deselected package libaudiofile-dev.
Unpacking libaudiofile-dev (from .../libaudiofile-dev_0.2.6-7ubuntu2_i386.deb) 
...
Selecting previously deselected package libfftw3-dev.
Unpacking libfftw3-dev (from .../libfftw3-dev_3.2.1-2ubuntu2_i386.deb) ...
Selecting previously deselected package libogg-dev.
Unpacking libogg-dev (from .../libogg-dev_1.1.4~dfsg-1_i386.deb) ...
Selecting previously deselected package libflac-dev.
Unpacking libflac-dev (from .../libflac-dev_1.2.1-2build1_i386.deb) ...
Selecting previously deselected package libflac++-dev.
Unpacking libflac++-dev (from .../libflac++-dev_1.2.1-2build1_i386.deb) ...
Selecting previously deselected package libgsl0-dev.
Unpacking libgsl0-dev (from .../libgsl0-dev_1.12+dfsg-1_i386.deb) ...
Selecting previously deselected package libid3-3.8.3c2a.
Unpacking libid3-3.8.3c2a (from .../libid3-3.8.3c2a_3.8.3-7.2ubuntu1_i386.deb) 
...
Selecting previously deselected package libid3-3.8.3-dev.
Unpacking libid3-3.8.3-dev (from 
.../libid3-3.8.3-dev_3.8.3-7.2ubuntu1_i386.deb) ...
Selecting previously deselected package libmad0-dev.
Unpacking libmad0-dev (from .../libmad0-dev_0.15.1b-4_i386.deb) ...
Selecting previously deselected package librecode0.
Unpacking librecode0 (from .../librecode0_3.6-15_i386.deb) ...
Selecting previously deselected package libvorbis-dev.
Unpacking libvorbis-dev (from .../libvorbis-dev_1.2.0.dfsg-6_i386.deb) ...
Selecting previously deselected package poxml.
Unpacking poxml (from .../poxml_4%3a4.3.1-0ubuntu1_i386.deb) ...
Selecting previously deselected package recode.
Unpacking recode (from .../recode_3.6-15_i386.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
install-info: warning: no info dir entry in `/usr/share/info/menu.info.gz'
Setting up libasound2-dev (1.0.20-3ubuntu5) ...

Setting up libaudiofile-dev (0.2.6-7ubuntu2) ...
Setting up libfftw3-dev (3.2.1-2ubuntu2) ...
Setting up libogg-dev (1.1.4~dfsg-1) ...
Setting up libflac-dev (1.2.1-2build1) ...
Setting up libflac++-dev (1.2.1-2build1) ...
Setting up libgsl0-dev (1.12+dfsg-1) ...
Setting up libid3-3.8.3c2a (3.8.3-7.2ubuntu1) ...

Setting up libid3-3.8.3-dev (3.8.3-7.2ubuntu1) ...
Setting up libmad0-dev (0.15.1b-4) ...
Setting up librecode0 (3.6-15) ...

Setting up libvorbis-dev (1.2.0.dfsg-6) ...
Setting up poxml (4:4.3.1-0ubuntu1) ...

Setting up recode (3.6-15) ...
Ignoring install-info called from maintainer script
The package recode should be rebuild with new debhelper to get trigger support

Processing triggers for libc-bin ...
ldconfig deferred processing now taking place

** Changed in: kwave (Ubuntu)
       Status: New => Incomplete

** Changed in: kwave (Ubuntu)
     Assignee: (unassigned) => Richard Johnson (nixternal)

-- 
apt-get build-dep doesn't install every packages for kwave
https://bugs.launchpad.net/bugs/403337
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