Public bug reported:

Binary package hint: gedit

Shell tools and scripts used to modify the content of a file being
edited often generate progress output delivered in stderr.

That material is rarely, if ever, intended to become a part of the file
being edited. It really should go to the bottom pane as it did before
2.28.

As a sample:
Contents of Finance_Get in .gnome2/gedit/tools
#!/home/doug/bin/tcsh
# [Gedit Tool]
# Comment=Read finance snippet into selection
# Name=Finance_Get
# Languages=plain
# Applicability=all
# Output=insert
# Input=nothing
# Save-files=nothing
/usr/bin/curl http://macnauchtan.com/cgi-bin/suntide.cgi

Result:
Hello , welcome to Mars. ;#  This is from my .tcshrc file which tests for 
$REMOTEHOST, perhaps another bug.
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   503    0   503    0     0   2324      0 --:--:-- --:--:-- --:--:--  4412
<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">
<HTML>
<BODY>
<p>SuntideIP: 174.22.131.171</p>
<p>rsa_pub: AAAAB3NzaC1yc2EAAAABIwAAAQEA2tp96NTIma SNIP
</BODY>
</HTML>

The output to stderr is mixed with stdout by gedit. The return characters used 
by curl
and the backspacing foul up the text output in stdout. It's really intended for 
display in a terminal.

** Affects: gedit (Ubuntu)
     Importance: Undecided
         Status: New

-- 
Tools no longer direct stderr into the bottom pane.
https://bugs.launchpad.net/bugs/474595
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