This might work. Make a start up script and put it to your Startup
Applications. The script should contain something like the following.
Try to adjust the sleep time, if it doesn't work or you if you want to
tweak it.

#!/bin/bash
sleep 30
xchat --minimize=2

-- 
xchat tray icon doesn't appear if xchat is in Startup Applications
https://bugs.launchpad.net/bugs/445509
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