Exactly the same situation: I had my workstation perfectly working with 9.04 
AMD64 with all latest updates and did a Dist Upgrade from Upgrade Manager. The 
upgrade did not complete for some reasons logged into /var/.... could not do 
anything but restart the system.
At boot, the system could not mount any of the md devs I have, (0,1,2,3, 
respectively /, swap, /home, /stripe).
Could do nothing since the busybox recovery terminal was read only. Could see 
that the mds were ok using cat /proc/mdstat but could not assemble the arrays 
to boot the computer. So after reading the above I did:

1) fsck (maybe not needed - but found many errors)
2) manually mount devs rw with 
sudo mount /dev/md0 -o remount,rw
sudo mount /dev/md2 -o remount,rw
sudo mount /dev/md3 -o remount,rw

Note: /dev/md1 is swap, already mounted rw

3) aptitude update -> could not run, so sudo dpkg --configure -a and apt dbase 
rebuilded
4) aptitude update
5) aptitude upgrade and restart after finish - OK!

But to do all this I had to have:
1) another computer available
2) pretty good system knowledge
3) cold blood

I can imagine the average user clicking "upgrade" and then have a non
bootable system!

Ubuntu+RAID=not for fainted hearts

Rich, thank you so much for posting this info! You're the man...

-- 
raid1 filesystems "cannot yet be mounted" after karmic upgrade
https://bugs.launchpad.net/bugs/486361
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