I have the same problem on 9.10 after upgrade to 2.6.31-16 on amd64. I
can't log out (Ctrl-Alt-Backspace doesn't work). The only thing I can do
is to reboot after opening a new console (Ctrl-Alt-F1) and logging in as
root. This happens after a certain duration. When the computer is idle
for 1 hour or so it's fine, it's only during the night after a certain
time of inactivity that the problem appears.

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left mouse button inactive after wakeup
https://bugs.launchpad.net/bugs/370943
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