Just installed eclipse via apt-get; list of update sites is empty and it
does not seem to be a GTK problem but a packaging problem since
exporting the list from another installation of eclipse and importing it
worked for me.

using Ubuntu 9.10 - the Karmic Koala 
uname -a : Linux 2.6.31-16-generic #53-Ubuntu SMP Tue Dec 8 04:01:29 UTC 2009 
i686 GNU/Linux

Last updated DEC. 20th 2009

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Update Site list is empty in "Install New Software"
https://bugs.launchpad.net/bugs/460944
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