I apologize for the misguided reply I must have been asleep when I read
that. Thanks for clarifying though it gave me a eye into the issue at
hand.

How did you go about setting up for Linux to read your windows partition? 
What steps did you take?
Please be as detailed as possible. 

I am assuming you have not done a fresh install and only did a apt-get
dist-upgrade on this system is that correct?

 I have done a clean install of Ubuntu 9.10 and it can read my NTFS
partitions just fine and fsck does not run. However my NTFS partitions
do not mount on boot due to they are not in fstab it is in mtab.  Having
my NTFS partition in fstab is something I would have to setup myself on
a install of Ubuntu 9.10

My conclusion of this issue is not a bug due to default install behavior
on dealing with NTFS for Ubuntu has changed. The reason why you are
still having a issue is your fstab was never changed from your initial
install of ubuntu 7.04 which if I remember did automount so could have
this issue.

Please reply with the questions above so I can take the appropriate
action needed to resolve this bug report.

-- 
vfat partition fscked on every boot
https://bugs.launchpad.net/bugs/125730
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