I have a similar problem on edgy.

initramfs stops and produces a prompt on boot because it can't find the
root filesystem (root=/dev/md1)

typing 'mdadm -As' from initramfs gives errors as the /etc/mdadm.conf
file built into initramfs contains only the UUID numbers of my RAID
sets. No keywords or anything else like the proper /etc/mdadm.conf on my
real root filesystem.

If I assemble the md devices manually in initramfs and then mount the
one that contains my root filesystem (-o ro) to /root i can exit
initramfs and it will boot my RAIDed machine correctly.

I've reinstalled my kernel (2.6.17-50-generic and 2.6.17-11-generic and
2.6.17-10-generic), and it rebuilds the initramfs with the useless
mdadm.conf I mentioned above.

This is with initramfs-tools version 0.69ubuntu20

So i have to manually boot every single time now. Bleah. This worked
fine until very recently (a month? two? I have highish uptimes). I
suspect  the most recent initramfs-tools update has a bug.

-- 
Mount Root Files System Failed
https://launchpad.net/bugs/47768

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