This affects me as well.  It's almost impossible to tell the difference
between a bug and a feature these days so you did the right thing
raising a bug report!

It appears that the developers have been reviewing the actions taken if
the "execute bit" isn't set.  So you can no longer run programs from a
CD or programs marked as untrusted.

The work around for now is to use a terminal, navigate to the folder
holding your program, use ls -l to confirm the 'x' bit is not set and
then use "chmod +x program.name" to set the bit.  The program should
run.  (It does for me.)  This doesn't work for CD's which are read only.

I wouldn't expect a team who ignores all the pleas not to move the
maximize, minimize, close buttons to the left will care if we don't like
this feature/bug so I wouldn't hold your breath waiting for a solution.
Fortunately there are enough people out there who like Ubuntu enough to
search for work-arounds for the unexplained vagaries of the developers
so google  your feature-bugs to find a fix.

-- 
Can't launch untrusted app-launchers (.desktop) in GNOME
https://bugs.launchpad.net/bugs/572918
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