Public bug reported:

Binary package hint: grub2

update-grub is typed in the terminal and this is overridden.

Here:

### BEGIN /etc/grub.d/40_custom ###
# This file provides an easy way to add custom menu entries. Simply type the
# menu entries you want to add after this comment. Be careful not to change
# the 'exec tail' line above.
menuentry "Plop Bootmanager"
insmod ext2
set root=(hd0,5)
search --no-floppy --fs-uuid --set f8c6fe87-dfe8-4df8-8b99-928b36b7062a
linux16 /boot/plpbt.bin

### END /etc/grub.d/40_custom ###

Description:    Ubuntu 10.04.1 LTS
Release:        10.04

grub2:
  Installed: (none)
  Candidate: 1.98-1ubuntu7
  Version table:
     1.98-1ubuntu7 0
        500 http://gb.archive.ubuntu.com/ubuntu/ lucid-updates/universe Packages
     1.98-1ubuntu5 0
        500 http://gb.archive.ubuntu.com/ubuntu/ lucid/universe Packages

** Affects: grub2 (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: custom grub.conf grub2

-- 
update-grub shouldn't override the custom section in grub.conf. 
https://bugs.launchpad.net/bugs/633098
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