strange. i almost thought my harddisk was crashing on me, since the
problems i had begun to affect my windows too. even when i used a CD
with ubuntu 6.06 it reported I/O errors. i was sort of beginning to
suspect that something had gone physically wrong with the drive (earlier
i have heard that "clicking sound" from the harddrive that people here
have reported). anyways after some tinkering the problems just vanished
for no apparent reason.

i've tried the following:
- deleting /boot/grub/menu.lst, changing hda->sda in /boot/grub/device.map, and 
running update-grub
- restoring BIOS defaults (!)
- removing some strange SCSI PNP devices from windows xp device manager.
- running update-initramfs -u

at some point it just started working again. if i should make wild
guesses about what happened i'd have to say it could have been a NVRAM
misconfiguration (BIOS) or somehow the drive must have been put in a
state which it had problems recovering from. the fact that i got some
strange error messages  from grub also reinforces this belief.

-- 
Extremely Slow boot up PATA disk detected as sda
https://launchpad.net/bugs/94981

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