This is an appmenu related issue. And java apps are usually not
supported unless they use the native GTK toolkit.

In this case, the solution is to disable appmenu for the application you need 
to start:
(from the command line)

$ UBUNTU_MENUPROXY= tuxguitar (or whatever the application name is)

To permanently disable appmenu for tuxguitar, the easiest way is
probably to unset the UBUNTU_MENUPROXY env. variable directly in the
wrapper script that is used to start the java application itself.


** Also affects: appmenu-gtk
   Importance: Undecided
       Status: New

-- 
{netbookremix} unity makes java useless
https://bugs.launchpad.net/bugs/659931
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