It seems like one potential problem is that the gconf keys setup by
unity-2d-default-settings did not get set correctly during the upgrade
for some reason. The postinst of this package is supposed to trigger
updating of the gconf keys, so not sure why this wouldn't have worked.
Couple of things to try as workarounds:

1) from terminal run the following:
sudo update-gconf-defaults --source /usr/share/gconf/unity-2d/mandatory 
--destination /var/lib/gconf/unity-2d.mandatory --no-signal
sudo update-gconf-defaults --source /usr/share/gconf/unity-2d/default 
--destination /var/lib/gconf/unity-2d.default --no-signal

2) logout and log back in using Unity 2D session

If you still don't get correct panel, launcher, etc, then try the following 
while logged into the Unity 2D session:
1) run the following commands from a terminal
gconftool-2 --set /desktop/gnome/session/required_components_list --type=list 
--list-type=string [windowmanager,panel,launcher,places,filemanager]
gconftool-2 --set /desktop/gnome/session/required_components/windowmanager 
--type=string metacity
gconftool-2 --set /desktop/gnome/session/required_components/panel 
--type=string unity-2d-panel
gconftool-2 --set /desktop/gnome/session/required_components/launcher 
--type=string unity-2d-launcher
gconftool-2 --set /desktop/gnome/session/required_components/places 
--type=string unity-2d-places
gconftool-2 --set /desktop/gnome/session/required_components/filemanager 
--type=string nautilus

2) log out and back in using Unity 2D session

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https://bugs.launchpad.net/bugs/705035

Title:
  Unity Qt session broken after an update

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