I can confirm this issue on my dual monitor setup as well.
thunderbird:
Installed: 3.1.7+build3+nobinonly-0ubuntu0.10.04.1
Candidate: 3.1.7+build3+nobinonly-0ubuntu0.10.04.1
Version table:
*** 3.1.7+build3+nobinonly-0ubuntu0.10.04.1 0
500 http://us.archive.ubuntu.com/ubuntu/ lucid-updates/main Packages
500 http://security.ubuntu.com/ubuntu/ lucid-security/main Packages
100 /var/lib/dpkg/status
3.0.4+nobinonly-0ubuntu4 0
500 http://us.archive.ubuntu.com/ubuntu/ lucid/main Packages
** Changed in: thunderbird (Ubuntu)
Status: New => Confirmed
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https://bugs.launchpad.net/bugs/699922
Title:
Thunderbird displays notification on wrong monitor
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