I found the cause of this second problem and committed a fix to GRUB
upstream:
2011-03-11 Colin Watson <cjwat...@ubuntu.com>
* grub-core/boot/i386/pc/lnxboot.S (real_code_2): Ensure that the
initial chunk read from the kernel always includes GRUB's multiboot
header, which is now outside the first sector.
This successfully boots into wubildr, at last! I'm now going to go
back, clean everything up, and check that the previous bug still
manifests after this fix.
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https://bugs.launchpad.net/bugs/693671
Title:
wubi install will not boot - phase 2 stops with: Try (hd0,0): NTFS5
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