this is probably a compiz focus stealing prevention issue.

** Also affects: compiz (Ubuntu)
   Importance: Undecided
       Status: New

** Changed in: unity
       Status: New => Confirmed

** Changed in: compiz (Ubuntu)
       Status: New => Confirmed

** Changed in: unity (Ubuntu)
       Status: New => Confirmed

** Changed in: unity
   Importance: Undecided => Low

** Changed in: compiz (Ubuntu)
   Importance: Undecided => Low

** Changed in: unity (Ubuntu)
   Importance: Undecided => Low

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https://bugs.launchpad.net/bugs/755697

Title:
  Application at front of screen but not 'selected' (causes bfb to turn
  blue)

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