Hi,
an update from my side.
I've added the ppa:ubuntu-x-swat/x-updates repo and updated my system (it 
actually only updates libva and nvidia-settings packages). However since then 
(after a reboot) I didn't experience the mouse problem any more.
At least so far... :)

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https://bugs.launchpad.net/bugs/773014

Title:
  Natty: GUI occasionally does not register mouse / touchpad clicks

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