Public bug reported:
Binary package hint: python-virtualenv
pip install numpy fails when i trying to run it in virtualenv
-system info:
virhilo@ThinkPad-SL:/tmp$ lsb_release -rd
Description: Ubuntu 11.04
Release: 11.04
virhilo@ThinkPad-SL:/tmp$ LC_ALL=C apt-cache policy python
python:
Installed: 2.7.1-0ubuntu5
Candidate: 2.7.1-0ubuntu5
Version table:
*** 2.7.1-0ubuntu5 0
500 http://nl3.archive.ubuntu.com/ubuntu/ natty/main amd64 Packages
100 /var/lib/dpkg/status
virhilo@ThinkPad-SL:/tmp$ LC_ALL=C apt-cache policy python-virtualenv
python-virtualenv:
Installed: 1.4.9-3ubuntu1
Candidate: 1.4.9-3ubuntu1
Version table:
*** 1.4.9-3ubuntu1 0
500 http://nl3.archive.ubuntu.com/ubuntu/ natty/universe amd64 Packages
100 /var/lib/dpkg/status
-steps to reproduce:
virhilo@ThinkPad-SL:/tmp$ virtualenv my_env --no-site-packages
New python executable in my_env/bin/python
Installing
distribute.................................................................................................................................................................................done.
virhilo@ThinkPad-SL:/tmp$ cd my_env/
virhilo@ThinkPad-SL:/tmp/my_env$ . bin/activate
(my_env)virhilo@ThinkPad-SL:/tmp/my_env$ pip install numpy
Downloading/unpacking numpy
Downloading numpy-1.5.1.tar.gz (2.3Mb): 2.3Mb downloaded
Running setup.py egg_info for package numpy
Running from numpy source directory.non-existing path in 'numpy/distutils':
'site.cfg'
F2PY Version 1
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /tmp/my_env/lib
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /tmp/my_env/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base']
language = c
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base']
language = c
define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]
include_dirs = ['/usr/include/atlas']
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /tmp/my_env/lib
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /tmp/my_env/lib
libraries lapack_atlas not found in /tmp/my_env/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries lapack not found in /usr/lib64/atlas-base
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base/atlas', '/usr/lib64/atlas-base']
language = f77
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base/atlas', '/usr/lib64/atlas-base']
language = f77
define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]
include_dirs = ['/usr/include/atlas']
build_src
building py_modules sources
building library "npymath" sources
Traceback (most recent call last):
File "<string>", line 14, in <module>
File "/tmp/my_env/build/numpy/setup.py", line 211, in <module>
setup_package()
File "/tmp/my_env/build/numpy/setup.py", line 204, in setup_package
configuration=configuration )
File "/tmp/my_env/build/numpy/numpy/distutils/core.py", line 186, in setup
return old_setup(**new_attr)
File "/usr/lib/python2.7/distutils/core.py", line 152, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/my_env/build/numpy/numpy/distutils/command/egg_info.py", line
8, in run
self.run_command("build_src")
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py", line
152, in run
self.build_sources()
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py", line
163, in build_sources
self.build_library_sources(*libname_info)
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py", line
298, in build_library_sources
sources = self.generate_sources(sources, (lib_name, build_info))
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py", line
385, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 681, in get_mathlib_info
st = config_cmd.try_link('int main(void) { return 0;}')
File "/usr/lib/python2.7/distutils/command/config.py", line 248, in
try_link
self._check_compiler()
File "/tmp/my_env/build/numpy/numpy/distutils/command/config.py", line
45, in _check_compiler
old_config._check_compiler(self)
File "/usr/lib/python2.7/distutils/command/config.py", line 103, in
_check_compiler
customize_compiler(self.compiler)
File "/usr/lib/python2.7/distutils/ccompiler.py", line 44, in
customize_compiler
cpp = cc + " -E" # not always
TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'
Complete output from command python setup.py egg_info:
Running from numpy source directory.non-existing path in 'numpy/distutils':
'site.cfg'
F2PY Version 1
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /tmp/my_env/lib
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /tmp/my_env/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base']
language = c
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base']
language = c
define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]
include_dirs = ['/usr/include/atlas']
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /tmp/my_env/lib
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /tmp/my_env/lib
libraries lapack_atlas not found in /tmp/my_env/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries lapack not found in /usr/lib64/atlas-base
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base/atlas', '/usr/lib64/atlas-
base']
language = f77
include_dirs = ['/usr/include/atlas']
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-base/atlas', '/usr/lib64/atlas-
base']
language = f77
define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]
include_dirs = ['/usr/include/atlas']
running egg_info
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-2.7
creating build/src.linux-x86_64-2.7/numpy
creating build/src.linux-x86_64-2.7/numpy/distutils
building library "npymath" sources
Traceback (most recent call last):
File "<string>", line 14, in <module>
File "/tmp/my_env/build/numpy/setup.py", line 211, in <module>
setup_package()
File "/tmp/my_env/build/numpy/setup.py", line 204, in setup_package
configuration=configuration )
File "/tmp/my_env/build/numpy/numpy/distutils/core.py", line 186, in
setup
return old_setup(**new_attr)
File "/usr/lib/python2.7/distutils/core.py", line 152, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/my_env/build/numpy/numpy/distutils/command/egg_info.py",
line 8, in run
self.run_command("build_src")
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py",
line 152, in run
self.build_sources()
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py",
line 163, in build_sources
self.build_library_sources(*libname_info)
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py",
line 298, in build_library_sources
sources = self.generate_sources(sources, (lib_name, build_info))
File "/tmp/my_env/build/numpy/numpy/distutils/command/build_src.py",
line 385, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 681, in get_mathlib_info
st = config_cmd.try_link('int main(void) { return 0;}')
File "/usr/lib/python2.7/distutils/command/config.py", line 248, in
try_link
self._check_compiler()
File "/tmp/my_env/build/numpy/numpy/distutils/command/config.py", line
45, in _check_compiler
old_config._check_compiler(self)
File "/usr/lib/python2.7/distutils/command/config.py", line 103, in
_check_compiler
customize_compiler(self.compiler)
File "/usr/lib/python2.7/distutils/ccompiler.py", line 44, in
customize_compiler
cpp = cc + " -E" # not always
TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'
----------------------------------------
Command python setup.py egg_info failed with error code 1
Storing complete log in /home/virhilo/.pip/pip.log
(my_env)virhilo@ThinkPad-SL:/tmp/my_env$
ProblemType: Bug
DistroRelease: Ubuntu 11.04
Package: python-virtualenv 1.4.9-3ubuntu1
ProcVersionSignature: Ubuntu 2.6.38-8.42-generic 2.6.38.2
Uname: Linux 2.6.38-8-generic x86_64
Architecture: amd64
Date: Tue May 10 01:52:34 2011
InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Release amd64 (20110427.1)
PackageArchitecture: all
ProcEnviron:
LANGUAGE=pl:en
LANG=pl_PL.UTF-8
SHELL=/bin/bash
SourcePackage: python-virtualenv
UpgradeStatus: No upgrade log present (probably fresh install)
** Affects: python-virtualenv (Ubuntu)
Importance: Undecided
Status: New
** Tags: amd64 apport-bug natty
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https://bugs.launchpad.net/bugs/780220
Title:
pip install numpy fail in virtualenv
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