Same problem here (edgy, feisty)
Ctrl Alt F1 -> Ctrl Alt F7 makes mouse buttons to work with the current window 
(1 time).
Very annoying.
The only solution I found is rebooting the system to get it working for a while.
Can't test xev, since I can't focus the window. The window behind xev test 
window won't lose the focus. (Alt tab not helping)


Bug Importance rated medium??
I'd rate it critical.

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Mouse clicks stop working sporadically
https://bugs.launchpad.net/bugs/41301
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