Oops. I'm sorry, but the issue is not a bug at all.
Restarting shell does not use pam modules. You have to relogin or use
other methods like sudo to trigger pam usage. I'm closing this bug as
invalid.
** Changed in: pam (Ubuntu)
Status: New => Invalid
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https://bugs.launchpad.net/bugs/584249
Title:
pam_env does not evaluate ~/.pam_environment
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