Hi, i have the exact same drive. I spent a lot of time investigating how AF is 
supported after reading so much about people complaining about the bad 
performance of these drives. Many even returned their hdd after buying them.
I can say that a stock install of ubuntu 11.04 doesn't correctly align the 
partitions. In fact this drive doesn't correctly report its physical block size 
(claiming 512B instead of 4096 in /sys/block/sda/queue/physical_block_size).

As said in this article 
(http://www.ibm.com/developerworks/linux/library/l-4kb-sector-disks/):
"In practice, however, the physical block size information is spurious, at 
least for the first generation of Western Digital Advanced Format drives. 
Unfortunately, this means that disk utilities cannot properly detect the 
presence of such disks."

In fact, while installing ubuntu with default options, it _seemed_ slower 
(installing, upgrading packages, etc.). I made some benchmarks to sort this 
out: http://openbenchmarking.org/result/1106082-MAXR-AFHDDAL95
So, while the reading speed isn't really affected, random writes were in some 
cases almost 3x slower.

Manually partitioning the HDD with gparted and the "align to MiB" option
while creating the partitions solved the problem.

I think the easiest fix would be to always use parted with the "-a
optimal" option when partitioning the system during an install of
ubuntu. (i don't think we still really care about wasting the first MB
of our HDD). Hope this helps.

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https://bugs.launchpad.net/bugs/583790

Title:
  Ubuntu 10.04 and Western DIgital's new Advanced Format SATA drives -
  constant drive errors

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