I have 2 PCs which had 10.10 and 11.04 during last half-year. One of them never 
encounter this bug and second one encounter it permanently. No matter what WM 
is used - Gnome2, Unity, KDE - invisible windows appear pretty often. One and 
only way to quick fix it - Alt-F4 until all windows closed. Right after that 
almost any opened window creates invisible window again.
This bug persists very long time and makes my second computer totally unusable 
with *buntu. Dunno, is it hardware-related, but if it helps:
Affected PC: ATI Radeon HD2600, AMD Athlon64 X2 3800, Wireless Logitech mouse 
LX6, MB ASUS M3A78-CM.
Non-affected: ATI Radeon HD3870, AMD Phenom 9750, Wireless Logitech mouse LX5, 
MB Gigabyte GA-MA790FX-DS5

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https://bugs.launchpad.net/bugs/709461

Title:
  Application windows can sometimes fail to display and will mask
  regions of the screen

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