Just was able to fix my first boot issue by pressing 'M' for manual
recover then doing the following:

mount -o remount,rw /
dpkg --configure -a         # Lots of packages were configured (due to a failed 
dist-upgrade)
apt-get update
apt-get upgrade
apt-get install gdm-guest-session gdm ubuntu-desktop  # Some packages were 
complaining about not configuring properly
grub-install /dev/sda

Aside from some weird issues with my BIOS entering a reboot loop, the
dist-upgrade seems to have worked alright.

There are still 2 problems I'm having:

1)  It doesn't seem to boot correctly from the first HDD if USB-HDD or CDROM 
are anywhere above in the boot priority list
2)  Every so often I still get the "softreset" and "The disk drive for /home is 
not ready yet or not present" errors (This is random.. it's usually /home, /, 
or whatever other partition happens to complain).

AHCI vs IDE modes in the BIOS don't change anything.  I'm guessing it's
a Gigabyte motherboard issue, or something to do with the ATI SB7x0
chipset.  So far I haven't tried compiling a new kernel with
"CONFIG_SATA_PMP=n" yet... but that seems like it might work...

References:
https://bugzilla.redhat.com/show_bug.cgi?id=468800
http://kerneltrap.org/mailarchive/git-commits-head/2008/6/14/2122314
http://ubuntuforums.org/archive/index.php/t-1052987.html
http://lime-technology.com/forum/index.php?topic=2642.msg33590#msg33590

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https://bugs.launchpad.net/bugs/285392

Title:
  Softreset failed (device not ready)

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