There are no security implications here. A malicious transparent proxy
can send any data it want, but it cannot send any signed repository
data. So if the proxy were to send malicious package information, the
packages would not be marked as trusted and the user would be warned
about it. If a proxy is sending invalid files, those files are rejected
at some stage in the process.  In short, no security problems for APT.

If other programs try to parse APT-internal files themselves, they may
have problems, but such use of the files is in no way supported and the
contents of /var/lib/apt/lists are implementation-internal files, not
meant for public use. I am not aware of any programs having problems
with this.

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https://bugs.launchpad.net/bugs/346386

Title:
  [MASTER] Update fails with invalid package files with "Encountered a
  section with no Package: header"

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