I'm having similar problems with a Seagate AF drive.  However, I learned
how to use GNU Parted and set up the partition such that it is aligned,
as described above by Maxime.  The problem is that when I install Ubuntu
on it, the system doesn't install correctly and hangs at the splash
screen.

However, if I let Ubiquity make all the partitions, then they end up
misaligned, according to Ubuntu's disk utility (palimpsest) and GNU
Parted.  So basically Ubiquity won't install on a correctly aligned
drive, and insists on misaligning the partitions it makes.  Either GNU
Parted AND Disk Utility are buggy, or Ubiquity is buggy.

** Changed in: ubiquity (Ubuntu)
       Status: New => Confirmed

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https://bugs.launchpad.net/bugs/583790

Title:
  Ubuntu 10.04 and Western DIgital's new Advanced Format SATA drives -
  constant drive errors

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