I have this same problem. Mine changes from Human-Clearlooks to Custom randomly. When I set it back, the window borders revert, but the rest of the window in Nautilus has the wrong color for the menu backgrounds and wrong icons. I'm attaching a screen shot of Nautilus with the wrong colors and icons.
** Attachment added: "Nautilus.png" https://bugs.launchpad.net/ubuntu/+bug/798984/+attachment/2272240/+files/Nautilus.png -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/798984 Title: 11.04 desktop theme keeps changing To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+bug/798984/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs