I've had this error before. See
http://bugzilla.gnome.org/show_bug.cgi?id=419389

All I did to remove it was delete all the big log files in .beagle/Log/.
It seemed that beagle kept looping on one file creating a huge log that
filled my partition. You could use a livecd and install baobab, use that
to find which files are the biggest, then just delete them. I didnt
notice any problems after that.

-- 
Log directory fills hard disk regularly
https://bugs.launchpad.net/bugs/72643
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