I have the same symptoms are a similar graphic card. If I disable the
Unity plugin  in CSM (and enabled awn to have a dock) everything is back
to normal. So it looks like a unity issue.

It's hard to reproduce since it doesn't happen at boot time but after I
spend some time with the machine. Disabling and enabling Unity in CSM
seems to help.

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https://bugs.launchpad.net/bugs/831202

Title:
  high cpu use with two monitors

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