To summarize things as I understand them:
- The machine was ok about a week ago
- There has been no change in BIOS/or firmware
- The card fails after a certain uptime and is not accessible anymore
- This happens on all Precise kernels as tested now and even on an Oneiric 
kernel (which
  previously was ok)

This really sounds like a hardware problem. Unfortunately the NICs
likely are onboard. Since in the initial dmesg, there is some life sign
(interrupt assignment) from the second interface, have you tried to set
that one up as a test.

VPD seems to be "vital product data" and from the symptoms it seems that
the communication between driver and card dies at some point and when
the driver attempts a recovery it fails to obtain certain hardware
information. Like it would be expected when the firmware running on the
card crashed for some reason.

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https://bugs.launchpad.net/bugs/960311

Title:
  Networking on Dell PowerEdge R300 with Broadcom Corporation NetXtreme
  BCM5722 Gigabit Ethernet PCI Express is not functional

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