The issue is most likely with GTK smooth scrolling. It likely doesn't
honor the xmodmap button mappings, as that's sort of a hack that has
worked because of the poor scrolling implementation in X. I don't know
what the proper resolution is, but I'm pretty certain it's a bug that
needs to be resolved in GTK somehow, or marked as "won't fix" by them.

** Package changed: unity (Ubuntu) => gtk+3.0 (Ubuntu)

** Changed in: gtk+3.0 (Ubuntu)
     Assignee: Chase Douglas (chasedouglas) => (unassigned)

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https://bugs.launchpad.net/bugs/966237

Title:
  Scrolling directing is hard-coded/reversed from xinput

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